Free Books on Computational Biochemistry,Biophysics,Computational Molecular Biology,Systems Biology
An Introduction to Computational Biochemistry
Paperback: 368 pages
Publisher: Wiley-Liss; 1st edition (
Language: English
ISBN-10: 047140120X
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Biophysics by Pattabhi
Book Description
Biophysics, being an interdisciplinary topic, is of great importance in modern biology. This book addresses the needs of biologists, biochemists, and medical biophysicists for an introduction to the subject. The text is based on a one-semester course offered to graduate students of life sciences, and covers a wide range of topics from quantum mechanics to pre-biotic evolution.
Publisher: Springer; 1 edition (
Language: English
ISBN-10: 1402002181
http://rapidshare.com/files/22993010/Biophysics_-_Vasantha_Pattabhi__N._Gautham.rar
Book Description
Biophysics - the science of physical principles of life itself, of biological systems - is presented here not merely as physics for biologists, but as an entirely independent subject with its own innate network of ideas and approaches. From the microscopic forces that constitute life, the intramolecular bonds and ionic interactions, to the macroscopic forces of the environment, temperature and pressure, the author presents and explains all aspects of life from a Biophysicist's point of view. Exciting biological themes such as neuronal processing and differentiation as well as current medical and environmental topics are introduced from a surprising perspective in this imaginative new textbook.
http://rapidshare.com/files/22992701/biophysics_4th_ed_-_oland_Glazer.rar
Bioinformatics: The Machine Learning Approach
Bioinformatics: The Machine Learning Approach, Second Edition (Adaptive Computation and Machine Learning)
Hardcover: 400 pages
Publisher: The MIT Press; 2 edition (
Language: English
ISBN-10: 026202506X
http://rapidshare.com/files/22992391/Bioinformatics_The_Machine_Learning_Approach_.rar
An Introduction to Environmental Biophysics
Book Description
This book describes the physical microenvironment of living organisms. It presents a simplified discussion of heat and mass transfer models and applies them to exchange processes between organisms and their surroundings. Emphasis is placed on teaching the student how to calculate actual transfer rates, rather than just studying the principles involved. http://rapidshare.com/files/22992337/An_Introduction_To_Environmental_Biophysics_-.rar
Artificial Intelligence and Molecular Biology
Book Description
The enormous amount of data generated by the Human Genome Project and other large-scale biological research has created a rich and challenging domain for research in artificial intelligence. These original contributions provide a current sampling of AI approaches to problems of biological significance; they are the first to treat the computational needs of the biology community hand-in-hand with appropriate advances in artificial intelligence.
http://rapidshare.com/files/22855426/Artificial_Intelligence.rar
An Introduction to Genetic Algorithms
John Holland
This is the best general book on genetic algorithms written to date. It covers background, history, and motivation; it selects important, informative examples of applications and discusses the use of genetic algorithms in scientific models; and it gives a good account of the status of the theory of genetic algorithms. Best of all, the book presents its material in clear, straightforward, felicitous prose. --This text refers to the Hardcover edition.
http://rapidshare.com/files/22855389/An_Introduction_to_Genetic_Algorithms_-_Melanie_Mitchell.rar
Paperback: 439 pages
Publisher: Prentice Hall PTR; 1st edition (
Language: English
ISBN-10: 0131008250
http://rapidshare.com/files/22855357/Bioinformatics_Computing_-_Bryan_Bergeron.rar
Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins, Second Edition
http://rapidshare.com/files/22855270/Bioinformatics.rar
Bioinformatics: From Genomes to Drugs
Book Description
Bioinformatics - the use of computers to retrieve, process, analyze and simulate biological information - promises to revolutionize the process of drug discovery and development. This book provides a broad, application-oriented overview of this technology. Contributions by internationally renowned specialists in the field afford a detailed insight into single bioinformatics components and algorithmic methods. In addition, the state-of-the-art in bioinformatics is evaluated equally from a global view by introducing real application scenarios such as genome projects that require the use of a whole set of bioinformatics tools.
http://rapidshare.com/files/22855067/Bioinformatics_-_From_Genomes_to_Drugs_-_Thomas_Langauer.rar
Beginning Perl for Bioinformatics
Book Description
With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challenge. Many biologists have a difficult time learning how to apply the language to bioinformatics. The most popular Perl programming books are often too theoretical and too focused on computer science for a non-programming biologist who needs to solve very specific problems
http://rapidshare.com/files/22854920/Beginning_Perl_for_Bioinformatics_-_James_Tisdall.rar
Systems Biology: Properties of Reconstructed Networks
Book Description
Genome sequences are now available that enable us to determine the biological components that make up a cell or an organism. The new discipline of systems biology examines how these components interact and form networks, and how the networks generate whole cell functions corresponding to observable phenotypes. This textbook describes how to model networks, determine their properties, and relate these to phenotypic functions. Some knowledge of linear algebra and biochemistry is required, since the book reflects the irreversible trend of increasing mathematical content in biology education.
Systems biology - dynamic pathway modeling - Olaf Waulkenhour
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System Modeling in Cellular Biology
System Modeling in Cellular Biology: From Concepts to Nuts and Bolts
Book Description
Research in systems biology requires the collaboration of researchers from diverse backgrounds, including biology, computer science, mathematics, statistics, physics, and biochemistry. These collaborations, necessary because of the enormous breadth of background needed for research in this field, can be hindered by differing understandings of the limitations and applicability of techniques and concerns from different disciplines. This comprehensive introduction and overview of system modeling in biology makes the relevant background material from all pertinent fields accessible to researchers with different backgrounds.
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Tutorials in Mathematical Biosciences I
Tutorials in Mathematical Biosciences I: Mathematical Neuroscience (Lecture Notes in Mathematics / Mathematical Biosciences Subseries)
Book Description
This volume introduces some basic theories on computational neuroscience. Chapter 1 is a brief introduction to neurons, tailored to the subsequent chapters. Chapter 2 is a self-contained introduction to dynamical systems and bifurcation theory, oriented towards neuronal dynamics. The theory is illustrated with a model of Parkinson's disease. Chapter 3 reviews the theory of coupled neural oscillators observed throughout the nervous systems at all levels; it describes how oscillations arise, what pattern they take, and how they depend on excitory or inhibitory synaptic connections.
Tutorials in Mathematical Biosciences I
Tutorials in Mathematical Biosciences I: Mathematical Neuroscience (Lecture Notes in Mathematics / Mathematical Biosciences Subseries)
Book Description
This volume introduces some basic theories on computational neuroscience. Chapter 1 is a brief introduction to neurons, tailored to the subsequent chapters. Chapter 2 is a self-contained introduction to dynamical systems and bifurcation theory, oriented towards neuronal dynamics. The theory is illustrated with a model of Parkinson's disease. Chapter 3 reviews the theory of coupled neural oscillators observed throughout the nervous systems at all levels; it describes how oscillations arise, what pattern they take, and how they depend on excitory or inhibitory synaptic connections.
Algebraic Statistics for Computational Biology
Book Description
The quantitative analysis of biological sequence data is based on methods from statistics coupled with efficient algorithms from computer science. Algebra provides a framework for unifying many of the seemingly disparate techniques used by computational biologists. This book offers an introduction to this mathematical framework and describes tools from computational algebra for designing new algorithms for exact, accurate results. These algorithms can be applied to biological problems such as aligning genomes, finding genes and constructing phylogenies. As the first book in the exciting and dynamic area, it will be welcomed as a text for self-study or for advanced undergraduate and beginning graduate courses.
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Computational Molecular Biology
Computational Molecular Biology: An Algorithmic Approach (Computational Molecular Biology)
Book Description
In one of the first major texts in the emerging field of computational molecular biology, Pavel Pevzner covers a broad range of algorithmic and combinatorial topics and shows how they are connected to molecular biology and to biotechnology. The book has a substantial "computational biology without formulas" component that presents the biological and computational ideas in a relatively simple manner. This makes the material accessible to computer scientists without biological training, as well as to biologists with limited background in computer science
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Computational Molecular Biology: An Introduction
Book Description
Recently molecular biology has undergone unprecedented development generating vast quantities of data needing sophisticated computational methods for analysis, processing and archiving. This requirement has given birth to the truly interdisciplinary field of computational biology, or bioinformatics, a subject reliant on both theoretical and practical contributions from statistics, mathematics, computer science and biology.
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Book Description
This textbook provides an introduction to dynamic modeling in cell biology, emphasizing computational approaches based on realistic molecular mechanisms. It is designed to introduce cell biology and neuroscience students to computational modeling, and applied mathematics students, theoretical biologists, and engineers to many of the problems in dynamical cell biology.
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Blast (Basic Local Alignment Search Tool)
Book Description
Sequence similarity is a powerful tool for discovering biological function. Just as the ancient Greeks used comparative anatomy to understand the human body and linguists used the Rosetta stone to decipher Egyptian hieroglyphs, today we can use comparative sequence analysis to understand genomes. BLAST (Basic Local Alignment Search Tool), is a sophisticated software package for rapid searching of nucleotide and protein databases. It is one of the most important software packages used in sequence analysis and bioinformatics
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Introduction to Bioinformatics
Sequence Analysis in a Nutshell
Sequence Analysis in a Nutshell
By Darryl Leon, Scott Markel
Publisher : O'Reilly
Pub Date : January 2003
ISBN : 0-596-00494-X
Pages : 302
Sequence Analysis in a Nutshell: A Guide to Common Tools and Databases pulls together all of the vital information about the most commonly used databases, analytical tools, and tables used in sequence analysis. The book contains details and examples of the common database formats (GenBank, EMBL, SWISS-PROT) and the GenBank/EMBL/DDBJ Feature Table Definitions
Introduction to Computational Molecular Biology
Book Description
Until now, those interested in the emerging field of computational molecular biology have used surveys and technical articles collected from many sources. Introduction to Computational Molecular Biology brings together major results in the field, in coherent and readable format.
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Mastering Perl for Bioinformatics
Mastering Perl for Bioinformatics
By James Tisdall
Publisher : O'Reilly
Pub Date : September 2003
ISBN : 0-596-00307-2
Pages : 396
Mastering Perl for Bioinformatics covers the core Perl language and many of its module extensions, presenting them in the context of biological data and problems of pressing interest to the biological community. This book, along with Beginning Perl for Bioinformatics, forms a basic course in Perl programming. This second volume finishes the basic Perl tutorial material (references, complex data structures, object-oriented programming, use of modules--all presented in a biological context) and presents some advanced topics of considerable interest in bioinformatics.
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Calculating the Secrets of Life
Calculating the Secrets of Life: Applications of the Mathematical Sciences in Molecular Biology
Midwest Book Review
As researchers have pursued biology's secrets to the molecular level, mathematical and computer sciences have played an increasingly important role - in genome mapping, population genetics, and even the controversial search for "Eve", hypothetical mother of the human race. Calculating the Secrets of Life is a survey of the partnership between the two fields, wherein leading experts look at how mathematical research and methods have made possible important discoveries in biology.
Bioinformatics: Methods and Protocols
Bioinformatics: Methods and Protocols (Methods in Molecular Biology)
Book Description
Hands-on users and experts survey the key biological software packages, offering useful tips and an overview of current developments. Among the sequence analysis systems reviewed are GCG, Omiga, MacVector, DNASTAR, PepTool™, GeneTool™, and the Staden Package. Molecular biology software includes Genotator and sequence-similarity searching using FASTA, CLUSTAL multiple sequence alignment, and phylogenetic analysis.
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Computational Biochemistry and Biophysics
Hardcover: 512 pages
Publisher: CRC; 1 edition (
Language: English
ISBN-10: 082470455X
http://rapidshare.com/files/22993076/Computational_Biochemistry_and_Biophysics_-_Oren_M._Becker.rar
Protein Structure Prediction
Book Description
World-class investigators detail their most successful methods-and the theory behind them-for delineating the shape, form, and function of proteins. The protocols range from basic to advanced and include sequence alignment, the prediction of transmembrane protein structure, and the development of suitable folding potentials. There are also techniques for receptor site prediction, the identification of motifs and domains, the comparative modeling of proteins, the docking of peptides and ligands, and ab initio approaches to protein loop and side-chain prediction.
Microarrays for an Integrative Genomics
Book Description
Functional genomics--the deconstruction of the genome to determine the biological function of genes and gene interactions--is one of the most fruitful new areas of biology. The growing use of DNA microarrays allows researchers to assess the expression of tens of thousands of genes at a time. This quantitative change has led to qualitative progress in our ability to understand regulatory processes at the cellular level.
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Labels: Biophysics, Computational Biochemistry, Computational Molecular Biology, Systems Biology
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